Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h08
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0279 + 3743025-3745169                                           30   1.3  
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830...    29   3.0  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    28   5.2  
08_01_0211 - 1675189-1675439,1675520-1675784,1675903-1675982,167...    27   6.8  
03_06_0693 - 35592547-35592651,35592771-35592869,35593024-355930...    27   9.0  
02_03_0251 + 16849905-16851308                                         27   9.0  

>04_01_0279 + 3743025-3745169
          Length = 714

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 304 TSHVAVSVYKAVS---RAQHVPLGDQRASARQLT 212
           T HVA  +Y AVS   R+     GD+ A+ARQLT
Sbjct: 477 TWHVATDIYLAVSGGDRSSPANAGDRAAAARQLT 510


>09_04_0232 -
           15882589-15882720,15882799-15882889,15882987-15883087,
           15883494-15883592,15883693-15883830,15883918-15884508,
           15884819-15884989,15885068-15885203,15885561-15885592,
           15886280-15886336,15886434-15886686,15886762-15886850,
           15887181-15887234,15887498-15887689,15887777-15887938
          Length = 765

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 196 NCVGISFDCGRRAPNNASIRSGAQRKR 116
           NCV ++  CG+ A   A  RSG + KR
Sbjct: 11  NCVLLAVLCGKHAEKRAQARSGLEAKR 37


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -3

Query: 424 DIVVSDRDVVPLVDDDHRHGVNTSPRV*N-----TASGANAEQCGTSHVAVSVYKA 272
           D+++SDRD +  + D  +  V T P   N       S A+ +Q G ++   + Y A
Sbjct: 668 DVIMSDRDKLARIGDGTQPVVGTDPNAHNPPVWPATSEASGQQWGAAYAPQATYPA 723


>08_01_0211 -
           1675189-1675439,1675520-1675784,1675903-1675982,
           1676992-1677799
          Length = 467

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 89  LEFETIAAVPLPLSSGSDTRIIGGSPTTIERYPYTVQVLYNGQLSC 226
           L F +I  +PL + +G     +GG P T ++ P  +   +N  L C
Sbjct: 369 LSFLSIIFLPLSIVTGVFGMNVGGVPWTEQKNPANLDGFFNVMLIC 414


>03_06_0693 -
           35592547-35592651,35592771-35592869,35593024-35593094,
           35594457-35595042
          Length = 286

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
 Frame = +2

Query: 107 AAVPLPLSSGSDTRIIGG--SPTTIERYPYTVQVLYNGQLSCGGSLITKRHVLSAGHCFI 280
           AA    L++ +D  +  G   P T+E       +LY   L    +      V +A   F+
Sbjct: 43  AAAARQLAAVADRNVYNGVYGPWTVEDSDVREVLLYRSGLVTAAASF----VAAASAAFL 98

Query: 281 DTNGNVASPTLFSIRSGSSVLYSGGSIH-SVSMIIVHERYNVPIR 412
              GN A     +IR G+ +LY+ G+    +S++++H  Y  PI+
Sbjct: 99  P-EGNAAGD---AIRQGADLLYATGAAGLGLSLVLIH-IYVTPIK 138


>02_03_0251 + 16849905-16851308
          Length = 467

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 376 DHRPRAVQRPDQRQRYRCTGIVFSCDPERERGASLYTGAV 495
           DHR R V R   +    C G  F   PE E   +   G V
Sbjct: 311 DHRSRLVPRVPDKYLGNCVGPGFVSAPEEELAGAAVAGGV 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,928
Number of Sequences: 37544
Number of extensions: 300045
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)