Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21h08
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    75   4e-14
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    38   0.004
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    38   0.004
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    36   0.017
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    32   0.28 
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    31   0.65 
Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    29   2.6  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   4.6  
U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical ...    27   6.1  
AF040648-1|AAK21412.1|  519|Caenorhabditis elegans Hypothetical ...    27   6.1  
AB007816-1|BAA28352.1|  394|Caenorhabditis elegans matrix metall...    27   6.1  
Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    27   8.0  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
 Frame = +2

Query: 140 DTRIIGGSPTTIERYPYTVQVLYN-GQLSCGGSLITKRHVLSAGHCFIDTNGNVASPTLF 316
           D R+IGGS ++   +P+TVQ+L   G   CGGSLI    VL+A HCF         PT +
Sbjct: 55  DHRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDR----RPTSY 110

Query: 317 SIRSGSSVLYSGGSIHSVSMIIVHERYNVPIRDN-DIAVLVLSSPVTLSASVAQACIP 487
           S+R G       GS H V+ + +H  YN+    + D A++ +  PV  S +    C+P
Sbjct: 111 SVRVGGH-RSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLP 167


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
 Frame = +2

Query: 146 RIIGGSPTTIERYPYTVQVLYNGQLS--CGGSLITKRHVLSAGHCFIDTNGNVASPTLFS 319
           R++GG  T    +P+T  +      +  CG S++ K H+++A HCF + +  V+S  +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCF-EEDERVSSYEVVV 84

Query: 320 IRSGSSVLYSGGSIHSVSMIIVHERYNVPIRDNDIAVLVLSSP-VTLSASVAQACIP 487
               ++       I  +  I  +  Y   I  +DIA+L +  P +  +      C+P
Sbjct: 85  GDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLP 140


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
 Frame = +2

Query: 158 GSPTTIERYPYTVQVLYNG-----QLSCGGSLITKRHVLSAGHCF 277
           G+PT +   P+ VQ+         ++ CGG+LIT +HVL+A HCF
Sbjct: 37  GNPTHLA--PWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCF 79


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 173 IERYPYTVQVLYNGQLSCGGSLITKRHVLSAGHCFIDTNGN 295
           I+ +P+ V    +G    GGS+I+  H+++A H FI T G+
Sbjct: 25  IKNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGS 65


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 164 PTTIERYPYTVQVLYNGQL-----SCGGSLITKRHVLSAGHCFIDTNGNVASPTLFSIRS 328
           P   ER+ Y V+VL          +C G+L++   VL++  CF DT  N+ +  +   + 
Sbjct: 22  PAKWERHQYLVKVLTKDTKLKNISTCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKD 81

Query: 329 GSSVL 343
            S+ +
Sbjct: 82  SSATM 86


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 221 SCGGSLITKRHVLSAGHCFIDTN 289
           +C G++++ RH+L A HCF   N
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQN 214


>Z81146-6|CAM06584.1|  151|Caenorhabditis elegans Hypothetical
           protein K10D11.7 protein.
          Length = 151

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 351 PEYRTLLPERMLNNVGLATLPLVSIKQCPALSTCLLVISEP 229
           PE++T+ P+  +N   + T P  +  Q P  S C  +++ P
Sbjct: 26  PEHQTITPKFPINTDAIYTFPSKAFTQFPVNSACTWLVNIP 66


>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 328 GANAEQCGTSHVAVSVYKAVSRAQH 254
           G NA + GT H+ + V+K VS A++
Sbjct: 63  GVNANKAGTEHLGLPVFKNVSEARN 87


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
           protein Y66D12A.15 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 356 SIHSVSMIIVHERYNVPIRDNDIAVLVLSSPVTLSASVAQACIPVQWAEVP 508
           S   V +++ H RY V  R +D+   +L   V  S  +     P Q  E+P
Sbjct: 162 SYGKVKLVLKHNRYFVESRHSDVMQKLLKDSVIQSCILDDRVQPAQQTELP 212


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 416 NDIAVLVLSSPVTLSASVAQACIP 487
           NDIAV  L  P+  S  +  AC+P
Sbjct: 121 NDIAVFELEEPIEFSKDIFPACLP 144


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 224 CGGSLITKRHVLSAGHC 274
           C G+L + RH+L+A HC
Sbjct: 75  CSGTLTSPRHILTATHC 91


>U29536-3|AAA68795.2|  179|Caenorhabditis elegans Hypothetical
           protein F45E12.5b protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 340 NTASGANAEQCGTSHVAVSVYKAVSRAQHVP---LGDQ 236
           N+A G  A+  G     + VYK   RA+H+P   LGD+
Sbjct: 64  NSALGKEADTTGKLPYCIHVYKQGRRAKHMPHAELGDK 101


>AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical
           protein H19M22.3c protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 181 ISLHSSGFIQRSIVVRRL---ADHQEARAERGTL 273
           +S     F  +SI VRRL   A+HQ+ R+E+G L
Sbjct: 401 VSQEMGTFSGKSIAVRRLIRHAEHQKERSEKGPL 434


>AF040648-1|AAK21412.1|  519|Caenorhabditis elegans Hypothetical
           protein H19M22.3a protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 181 ISLHSSGFIQRSIVVRRL---ADHQEARAERGTL 273
           +S     F  +SI VRRL   A+HQ+ R+E+G L
Sbjct: 467 VSQEMGTFSGKSIAVRRLIRHAEHQKERSEKGPL 500


>AB007816-1|BAA28352.1|  394|Caenorhabditis elegans matrix
           metalloproteinase protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 181 ISLHSSGFIQRSIVVRRL---ADHQEARAERGTL 273
           +S     F  +SI VRRL   A+HQ+ R+E+G L
Sbjct: 342 VSQEMGTFSGKSIAVRRLIRHAEHQKERSEKGPL 375


>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 287 NGNVASPTLFSIRSGSSVLYSG--GSIHSVSMIIVHERYNVPIRDNDIAVLVLSSPVTLS 460
           N + A   L  I + +++++    GS+ +++ ++VH+ Y   +    +   ++S PVT++
Sbjct: 262 NTSAALDHLDMIENNTAIIFLSLHGSMSTITTLLVHKSYRKAVIKLILQTKIVSKPVTIN 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,948
Number of Sequences: 27780
Number of extensions: 236618
Number of successful extensions: 684
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)