Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g18
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...   148   4e-37
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.1  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    25   6.5  
SPCC297.04c |set7||histone lysine methyltransferase Set7 |Schizo...    25   8.5  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score =  148 bits (359), Expect = 4e-37
 Identities = 58/110 (52%), Positives = 82/110 (74%)
 Frame = +2

Query: 173 NRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEI 352
           N+Q WED +FP +C+ CLGDN Y+RMTKE  G+ECKICS+P T+FRW      +  KT+I
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69

Query: 353 CQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVXDDLPRNEVXKEYYXXN 502
           C  C++ KN CQ+C+LDL++GLPI +RDAALK+ +  P N++ +E++  N
Sbjct: 70  CVGCARYKNCCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQN 119


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 164 NTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPF 298
           NT+    W  A F I C  C      + + + +    CK C+ PF
Sbjct: 54  NTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCNHPF 98


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 75  ERSVLFDRLSCVESKIISRKD---TPWLHRS 158
           +R+VLFDRLS V+ +++        PWL ++
Sbjct: 33  KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 316 SRSKNAFQENRNMSDLFETEKCLSNMFIGFGIWSANPSE 432
           S  KN F +N +++ +      LSN+   + I+S  PSE
Sbjct: 92  SPKKNDFDDNMSLNSIVTMGSILSNVSSVWSIFSTAPSE 130


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 289 KTFHSVSMVSRSKNAFQENRNMSDLFET 372
           K+ H  +M+    +A +EN N++DLFET
Sbjct: 145 KSKHGSNMIHFEASA-KENTNVTDLFET 171


>SPCC297.04c |set7||histone lysine methyltransferase Set7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 147

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 203 PILCQTCLGDNPYIRMTKEKY 265
           PI  QTC+  +P +  +KE+Y
Sbjct: 27  PIPAQTCIEISPVLMFSKEEY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,039
Number of Sequences: 5004
Number of extensions: 44466
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)