Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g18
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353...   174   4e-44
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145...   173   7e-44
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840...    30   1.2  
11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843...    28   3.7  
07_03_1728 + 29076733-29079069                                         28   3.7  
11_06_0110 + 20212221-20214011,20214072-20214368                       27   6.5  

>06_01_0493 -
           3536207-3537056,3537603-3537826,3538234-3538503,
           3539042-3539146
          Length = 482

 Score =  174 bits (423), Expect = 4e-44
 Identities = 72/105 (68%), Positives = 88/105 (83%), Gaps = 2/105 (1%)
 Frame = +2

Query: 185 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 364
           WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG   R+KKTEICQTC
Sbjct: 14  WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73

Query: 365 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--XDDLPRNEVXKEYY 493
            KLKNVCQ CLLDLEYGLP+QVRD AL +   D +PR++V +EY+
Sbjct: 74  CKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYF 118


>07_01_1143 -
           10711023-10711884,10713603-10713826,10714253-10714522,
           10715071-10715175
          Length = 486

 Score =  173 bits (421), Expect = 7e-44
 Identities = 72/105 (68%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
 Frame = +2

Query: 185 WEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEICQTC 364
           WE +DFPI+C++CLGDNPY+RM + +Y KECKIC+RPFTVFRW PG   R+KKTEICQTC
Sbjct: 14  WERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGRDARYKKTEICQTC 73

Query: 365 SKLKNVCQTCLLDLEYGLPIQVRDAALKV--XDDLPRNEVXKEYY 493
            KLKNVCQ CLLDLEYGLP+QVRD AL     D +PR++V +EY+
Sbjct: 74  CKLKNVCQVCLLDLEYGLPVQVRDTALSTNSNDAIPRSDVNREYF 118


>05_07_0285 +
           28982502-28982782,28982888-28982989,28983189-28984006,
           28984594-28985050,28985203-28985242
          Length = 565

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 125 IKKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGD 232
           I KG  +AT+ +TN Y RQ +++    I  Q C  D
Sbjct: 148 ITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPD 183


>11_05_0103 -
           19083663-19083856,19083962-19084169,19084239-19084323,
           19084591-19084865
          Length = 253

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 217 LAQYWKIGVFPILTIVCVC*LRCSHGVSFLDIILDSTQLNLSNKTLLSHFYM 62
           + + W  G+  +L +  V  LR SHGV+    I++    N SNK+  SH  M
Sbjct: 202 ITKVWNGGLRRLLGLRPVTSLRGSHGVNVTGEIVEPEADNKSNKSSGSHGLM 253


>07_03_1728 + 29076733-29079069
          Length = 778

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 392 CLLDLEYGLPIQVRDAALKVXDDLPR 469
           C L  EY LPI VR+++L+   DLPR
Sbjct: 623 CTLVGEYVLPIIVRNSSLQSCRDLPR 648


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 338 KKTEICQTCSKLKNVCQTCLLDLEYGL 418
           KK  +C   + LKN+C   +LDL+Y L
Sbjct: 315 KKGNMCIMKANLKNLCNLEVLDLDYRL 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,369
Number of Sequences: 37544
Number of extensions: 256822
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)