Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g18
         (505 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif prote...   241   1e-63
AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens ...   241   1e-63
AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens ...    31   3.0  
AJ549096-1|CAD79346.1|  157|Homo sapiens BBF2H7/FUS protein prot...    29   9.2  

>BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif protein
           22 protein.
          Length = 420

 Score =  241 bits (590), Expect = 1e-63
 Identities = 102/121 (84%), Positives = 111/121 (91%)
 Frame = +2

Query: 143 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 322
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 323 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVXDDLPRNEVXKEYYXXN 502
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L   DD+P+++V KEYY  N
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 503 L 505
           +
Sbjct: 121 M 121


>AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
           RIBONUCLEOPROTEIN RB97D. ).
          Length = 420

 Score =  241 bits (590), Expect = 1e-63
 Identities = 102/121 (84%), Positives = 111/121 (91%)
 Frame = +2

Query: 143 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 322
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 323 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVXDDLPRNEVXKEYYXXN 502
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L   DD+P+++V KEYY  N
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 503 L 505
           +
Sbjct: 121 M 121


>AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40319 fis, clone TESTI2030754. ).
          Length = 141

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +2

Query: 137 HAMATSKSTNTYNRQNWEDADF--PILCQTCLGDNPYIRMTKEKY-GKECKICSRPFTVF 307
           H    S ST+   R+ WEDADF  P+L Q C   NP +   K  +  KEC+    PF   
Sbjct: 62  HGNEVSGSTS---REVWEDADFICPVLKQ-C--TNPKLNENKNIHQAKECE--KSPFLSL 113

Query: 308 ----RWCPGARMR--FKKTEICQTCSK 370
               +W PG   R     T +C  CS+
Sbjct: 114 SPHQQWKPGLPRRNDALPTSLCLCCSE 140


>AJ549096-1|CAD79346.1|  157|Homo sapiens BBF2H7/FUS protein
           protein.
          Length = 157

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 467 EVGHXELLMQHLSLGLADHIPNPIN 393
           E G  E LM H +LG  DH+  P N
Sbjct: 23  EPGDGEALMYHTALGTKDHVMTPTN 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,620,531
Number of Sequences: 237096
Number of extensions: 1531183
Number of successful extensions: 2669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2669
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)