Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g17
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   6.8  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    24   9.0  

>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
 Frame = -3

Query: 368  PLLISNFIILASVYCRYSYYYDSM*TPYCLFVRNPNIYIISVD-FIWMVLWVAVCRIGNL 192
            P+  SN I LA    ++S   D     Y L+ ++  +Y+++    +   +     R  N+
Sbjct: 873  PIYGSNLIRLAEKLPKHSTSID-----YTLYAKDDPLYLLNTTKALRSCILSTEERASNM 927

Query: 191  RILLYNVNVRC*FECFSPVLVEANVYILFCNTGLP--LLTETKRKFS 57
            + ++        F C +P  V  ++  LFC T +P  LL E  RK +
Sbjct: 928  KEIIQR------FACITPKAVVVDLPELFCKT-IPRDLLYEVSRKIN 967


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 275 QINNMVFTWNHNNKNNDSKL 334
           Q+ ++V  W H++  +DSKL
Sbjct: 45  QLKDLVEEWMHDSNKSDSKL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,383
Number of Sequences: 5004
Number of extensions: 31894
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)