Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g11
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    59   6e-10
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   0.93 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   1.6  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   2.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.6  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
 Frame = +2

Query: 119 PQEEKVIQIIEDGCRTAHVALV----AVGDKLKYILATENMKAGDIIKTSCKLPRI---- 274
           P   +VI+I  D  R+ H+ALV    +      YILA + ++ GD +++   L +     
Sbjct: 80  PGVHRVIRIEYDPGRSGHIALVEKLNSETANKSYILACDGLREGDTVESFRSLLKTGSNG 139

Query: 275 ------PVRANE-------------GDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTS 397
                 PV A E             G+ + L  +PIGT++H +   P Q      +AG+S
Sbjct: 140 EPVEMDPVLAAEIEDGTFAAKNLKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSS 199

Query: 398 GTIVRKQDDRVIVQMPSKRLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRP 568
             I+       IV++ S           A +G +SN+      +G   R+RWLG RP
Sbjct: 200 ARIIAFDGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKAGRSRWLGIRP 256


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 455 LFSFNQLCMAVVGRLSNVLHGSTPIGS 535
           LF+ +Q C  +     N++H S PIGS
Sbjct: 574 LFTLDQTCNIIAKLADNLIHPSVPIGS 600


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 332 IVHCVEKEPGQGGLYIHAA---GTSGTIVRKQDDRVIVQMPSKRL 457
           I+ C++K P  G +++H +   G +GT +       I+Q+P   L
Sbjct: 613 IIRCIDKVPNDGPMFVHCSAGVGRTGTFIAVDQ---ILQVPKNIL 654


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 491 GRLSN--VLHGSTPIGSPQRNRWLGNRPRSGLWQR 589
           G +SN  +++ STP+G+ QR  +L  R     WQ+
Sbjct: 29  GSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 264 SLQDVLIISPAFMFSVAKIYFNLSPTATKATCAVLHPSSIIC 139
           S  DVL+IS   +  VA + + +  T  +    + HP+  +C
Sbjct: 87  STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVC 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,576
Number of Sequences: 5004
Number of extensions: 53112
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)