Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g11
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0138 + 13325418-13325954                                         28   6.7  
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    27   8.9  

>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 292 RRCLRI--RSFTYRNDSALRRERTWSRRSIHTRGRHVW 399
           RRC R   RS  +R+  + R  R+W RR    R R +W
Sbjct: 85  RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRRWRRLW 122


>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 512 HGSTPIGSPQRNRWLGNRPRSGLWQRKSGR 601
           HG  P G      W  ++ RSG  QR  GR
Sbjct: 356 HGERPAGGGTEVAWASSQGRSGGMQRAGGR 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,568
Number of Sequences: 37544
Number of extensions: 371763
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)