Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g11
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    26   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.77 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   1.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 112 GSTTRRKSYTDYRRWMQNCACSFSGSW*QVKIYFSHREHES 234
           G    R    DY RW+Q  A  F  SW +V  Y+   E+ +
Sbjct: 158 GMAYHRGHRKDYERWVQQGA--FGWSWDEVMPYYLKSENNT 196


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
 Frame = +2

Query: 233 AGDIIKTSCKLPRIPV------RANEG--DAYVLGALPIGTIVHCVEKEPGQGGLY-IHA 385
           AG+ ++  C +   P+      RAN    D      LP GT+V    ++ G  G+Y   A
Sbjct: 532 AGETLRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSA 591

Query: 386 AGTSGTIVRKQDDRVIVQMP 445
               G   R+  D  ++  P
Sbjct: 592 RNKQGHSARRSGDVAVIVPP 611


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 252 VLIISPAFMFSVAKIYFNLSPTATKA 175
           +L  SP    ++A  YFN  P+AT A
Sbjct: 121 LLAWSPYAALAIAAQYFNAKPSATVA 146


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 262 TP*NTSSCK*RRCLRIRSFTYRNDSAL-RRERTWSRRSIHTRGRHVWDHRE 411
           +P   S+   + CL +   T      +  R    SRR ++ RGR V   RE
Sbjct: 694 SPLEPSAVPSKFCLSVTLLTVATSLVIVSRYAEKSRRMLYLRGREVVAQRE 744


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 296 DAYVLGALPIGTIVHCVEKEP 358
           D  V+ + PIG + H + K+P
Sbjct: 163 DEDVICSTPIGNLSHALLKDP 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,468
Number of Sequences: 438
Number of extensions: 4074
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)