Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g08
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    23   7.2  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    23   7.2  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    22   9.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    22   9.5  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 150 FFTNHIDFNYF 118
           FF+N+ID N+F
Sbjct: 7   FFSNYIDINFF 17


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 18  TLHVKFTLVDLMP 56
           TLH+ FTL D++P
Sbjct: 445 TLHLSFTLGDIIP 457


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 5   LFIYYTSCKIYISGLNA*GI 64
           LFIY+TS  I+  G  A G+
Sbjct: 241 LFIYWTSLSIFQFGAYAAGV 260


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 39   LVDLMPKAFSTSQ 77
            LVDL+PK F TS+
Sbjct: 985  LVDLIPKEFPTSK 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,780
Number of Sequences: 5004
Number of extensions: 5655
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)