Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g08
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   7.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   7.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    18   9.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    18   9.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 51  MPKAFSTSQPKVVQYK*W 104
           +PK   T  PK+  Y  W
Sbjct: 217 VPKHSKTKSPKLRPYPNW 234


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 36  TLVDLMPK 59
           TLVDL+PK
Sbjct: 246 TLVDLVPK 253


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 2   YLFIYYTSCKIYISGL 49
           YL++Y+    +Y+S L
Sbjct: 111 YLWLYHDKTLLYMSKL 126


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 153 FFFTNHIDFNY 121
           F   NH DF+Y
Sbjct: 475 FTHLNHADFSY 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,905
Number of Sequences: 438
Number of extensions: 322
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)