Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21g07
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 33 0.21
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140 30 1.5
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 29 3.4
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 28 4.6
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510... 28 4.6
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 28 6.0
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 27 8.0
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 27 8.0
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 8.0
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +2
Query: 425 CGT*WKYNCEPAHCTPPQVSTETGPRLQVSRNDRLPHGNLVIISQS*RT 571
CG W C P HC + + L+V N LP L QS RT
Sbjct: 1003 CGNKWYSKCSPVHCRKLDIPSSEVALLKVKTNINLPLLELRTAEQSLRT 1051
>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
Length = 309
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 430 ATLGTPEKLPAGPWSAKSSISCRTLPILRCKVAAFQFGWS-SRYSCM 293
AT GTP L AGP S +++P +C AA W+ S + C+
Sbjct: 23 ATPGTPAPLFAGPRVDSLSYERKSMPRCKCLPAAVAEAWAPSAHGCV 69
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 194 PWLPYHFIDFEIRIFL*SLTYSIVFLE 114
PW+ IDF I +F S+ Y + FLE
Sbjct: 163 PWMAATLIDFYINVFAISVNYILWFLE 189
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 469 GTVCRFTVILPSRATLGTPEK---LPAGPWSAKSSISCRTLPILRCKVAAF 326
G + + ++LP TL + LP GPW+A + P LR +V AF
Sbjct: 175 GDILKPDLVLPLMETLPIEQLASYLPEGPWTAGDILELLQSPPLRQQVEAF 225
>04_04_1696 +
35448667-35449641,35449726-35450562,35450667-35451001,
35451371-35451497,35451594-35451752,35451872-35453053,
35453164-35453424,35453513-35453761
Length = 1374
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 35 RRLFICNSFINRSCWRPINAQNKTGKF 115
RRL +C +NR C R +K KF
Sbjct: 698 RRLSVCGHLVNRDCLRYFGLGSKVAKF 724
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 324 WNAATLHLSMGKVRHEMLLFADQG 395
W+A T L MG+ R LLFA G
Sbjct: 789 WSARTAALGMGRARRSKLLFAVDG 812
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 277 REYGTTCTSILMTSRTGMPPPYILVWARC-GTRCYFLPTKDPQAVSLEYL 423
R G T S ++T W R T +FLP K+PQ SLE+L
Sbjct: 157 RFLGQTLVSKQFITQTEATEFLACSWERLYSTIDFFLPAKNPQLKSLEFL 206
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 530 AVGHYEKLGAVDQFQLKLEEGYSV 459
AVG KL + +F+++LE+GY +
Sbjct: 900 AVGQLTKLQELQEFRVRLEDGYKI 923
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 369 RAAPCPY*DVRWRHSSSAGHQDTR 298
+AAP P +VR++H+SS G +TR
Sbjct: 321 KAAPGPPAEVRYQHASSMGAVETR 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,852
Number of Sequences: 37544
Number of extensions: 394652
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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