Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g06
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   2.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   4.5  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   4.5  

>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 173 WPFAFQHGGSLNCAVSQRW 229
           WP A Q GG +N + +Q W
Sbjct: 79  WPGALQIGGGINISNAQNW 97


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 133  LNRSFTLLLSILGLAFRVPTWRQS 204
            L+R  + +L ILGL F  P W Q+
Sbjct: 2243 LSRYHSWILPILGLGFGAPRWLQT 2266


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 344 DVSSNDACAQMQYCDYGYKEDYYEIRNSYPTDNAIN 451
           + + ND C  M +     +ED+     S+PT+ A++
Sbjct: 464 ETAVNDDCKGMNFSGNRRQEDHLNDFTSFPTETAVS 499


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 272 VLCWIYNSVLERQRSIFV-ILHSLDCRHV 189
           +LC +YNS+L +QR I + +L    C ++
Sbjct: 1   MLCLVYNSILCKQRRISLKVLQQFRCWNI 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,363
Number of Sequences: 5004
Number of extensions: 28354
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)