Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g05
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548...    29   2.8  
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004...    28   6.5  
11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128           27   8.6  
05_03_0382 + 13342764-13342958,13343178-13343278,13343373-133434...    27   8.6  

>04_04_0605 +
           26549904-26551939,26553931-26554180,26554764-26554829,
           26555194-26555388,26555830-26556141,26556537-26556595,
           26557138-26557381,26557466-26557528,26557997-26558386
          Length = 1204

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 209 KMRQKIQGNDAFQRINYLYQISKAM--ASKNTILSSYYGNLVVNIA 340
           K++ +I+G D  QR+ ++ + SK     +K+ I ++YYG  +V  A
Sbjct: 780 KVKDQIEGMDVDQRVEWMRENSKETYDEAKSCITTNYYGAKLVTEA 825


>09_06_0308 -
           22199389-22199451,22199604-22199924,22200178-22200423,
           22202152-22203337,22203487-22203551,22204205-22204486,
           22205005-22205106,22205587-22206105
          Length = 927

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 433 HISRYIFYEDASTLFAYLPFYLWVY 359
           H+ +Y F++DA+T  A LPF  W +
Sbjct: 674 HVYKYSFHDDAATPMAELPFE-WTF 697


>11_01_0152 + 1270752-1270947,1271113-1271438,1271571-1272128
          Length = 359

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 21  DSMIN-FIYFKKKSVKNLLKIPTNKSNEI 104
           DS+I+  IYF   S  N+L  P N SN +
Sbjct: 230 DSIIDPSIYFSNSSAANILSAPPNMSNSV 258


>05_03_0382 +
           13342764-13342958,13343178-13343278,13343373-13343459,
           13343559-13343709,13343826-13344116,13346058-13346197,
           13346276-13346467,13346559-13346631,13346708-13346852,
           13347017-13347124,13347213-13347306,13348245-13348324,
           13348665-13348738,13349236-13349253
          Length = 582

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 356 KIHPEVKRQICKKCRSILIENVSTNMKIRNHNKLKRIEWKCNIC-GERKGLPAEKNKDHR 532
           +I+     + C +CR   ++  ++  KI+ +NK   I++ C  C   R G  AEK  +  
Sbjct: 53  RIYDPENGKTCHQCRQKTMDFAASCHKIKKNNKQCTIQY-CRKCLFNRYGQEAEKVANDG 111

Query: 533 VW 538
            W
Sbjct: 112 TW 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,872
Number of Sequences: 37544
Number of extensions: 240793
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)