Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21g02
         (132 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   4.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    18   9.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 56  RVYFCDXCILMLVGINYFLLAEVVP 130
           +V  C   +L L  + + LLAE++P
Sbjct: 280 KVSLCSSILLSLT-VFFLLLAEIIP 303


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 80  ILMLVGINYFLLAEVVP 130
           IL+ + + + LLAE++P
Sbjct: 278 ILLSLTVFFLLLAEIIP 294


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 80  ILMLVGINYFLLAEVVP 130
           IL+ + + + LLAE++P
Sbjct: 274 ILLSLTVFFLLLAEIIP 290


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 95  RPT*ECKXRKNIPSRSPS 42
           RP   C     +PS+SP+
Sbjct: 584 RPQRACSTTGGVPSKSPT 601


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 57  GYIFATFAFSCWSGL 101
           G  +AT   SCW+ +
Sbjct: 99  GIGYATCVLSCWTNI 113


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 57  GYIFATFAFSCWSGL 101
           G  +AT   SCW+ +
Sbjct: 152 GIGYATCVLSCWTNI 166


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 46  GLLEGIFLRXLHSHVGR 96
           G +  +FL   H H GR
Sbjct: 532 GAVVRVFLGPKHDHQGR 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,407
Number of Sequences: 438
Number of extensions: 336
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)