Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f22
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    30   1.0  
AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    28   3.2  

>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 161 QYKWYIKLSSRKTLL*NTVNLIHLYVTDKCFKIF 60
           QYK  +KLS     + N +N+IH +V DK  K F
Sbjct: 98  QYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRF 131


>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 215 LVYYIEAEIFILA-EYTRL*TILILYKIVEQGLIIGYGK 328
           ++ + E E+F L+ E+ R    LI++ I+  GL+IG+ K
Sbjct: 23  VILFYEYEVFDLSDEWHRFNLYLIIFTIMVLGLLIGFAK 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,109
Number of Sequences: 27780
Number of extensions: 176804
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)