Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21f20
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 33 0.10
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 1.6
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 28 3.8
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 28 5.0
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 28 5.0
12_01_0060 - 499291-501228 27 6.6
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 27 6.6
09_02_0196 - 5678744-5679222,5679304-5679937 27 6.6
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 27 6.6
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 27 6.6
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 27 6.6
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 27 8.8
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 33.5 bits (73), Expect = 0.10
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +1
Query: 235 IDEMGSRVDELEKNITDLMTQAGVE 309
+DEMG+++DELE+++ DL + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +1
Query: 76 EPNPDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 255
E + +N+ + E E + KN +++ + V S LQN Q ++ + E+G++
Sbjct: 480 EASFENLGNDLEQELERISIMHKNNEDL-ELVNSNLQNDLATVQGQKNEAVASTLELGNK 538
Query: 256 VDELEKNITDLMTQAGVEN 312
++E + I++L Q VEN
Sbjct: 539 LEEKNQQISNL--QEAVEN 555
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/74 (25%), Positives = 38/74 (51%)
Frame = +1
Query: 91 NIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELE 270
N+ + E ++ + KN +E+ + S LQN Q ++ + E+G++++E
Sbjct: 744 NLGNDLEQKFEQISVMQKNNEEL-ELANSNLQNELAMVQEQKNEAVASTVELGNKLEEQN 802
Query: 271 KNITDLMTQAGVEN 312
+ I++L Q VEN
Sbjct: 803 QQISNL--QEAVEN 814
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 127 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 273
P+ +++ T S L+ + + ++ + +RID+MG+ V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 100 KNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRID----EMGSRVDEL 267
K+++N + + PK+ + V+S +D Q +D I ID E S+ E
Sbjct: 222 KSSKNTTTAESRHPKDTSLEEKQVKSATSKEEDGLQDKTDDAIEDIDDIYGESHSKKIEF 281
Query: 268 EKNITDLMTQAGVENE 315
+ +T +GV+++
Sbjct: 282 PRRNKKFLTNSGVDSQ 297
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +1
Query: 82 NPDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVD 261
+P I+ + NE+ T S+ +N + + +QS L++ + ++ +DE+ S
Sbjct: 814 DPLGILNSRTNEHHT--SELRNKELLVSELQSTLEDKSKRLDETESKLNALVDEVNSLKK 871
Query: 262 ELE 270
ELE
Sbjct: 872 ELE 874
>12_01_0060 - 499291-501228
Length = 645
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 196 DKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENEK 318
DK +SDQI ++DE+G + + T + VE+E+
Sbjct: 529 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEE 569
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 196 DKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENEK 318
DK +SDQI ++DE+G + + T + VE+E+
Sbjct: 1314 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEE 1354
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 169 VQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDL-MTQAGVENE 315
+ +LL + ++ + ID+ RV ELE +TDL + Q +E E
Sbjct: 117 IVTLLSRWAEAVDDFYEEALLEIDDQQRRVGELESEVTDLTVHQLQLEEE 166
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 109 ENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEM-GSRVDELEKN 276
+ EY PA D +V + + L DKF+ M +++ +D+M + EL KN
Sbjct: 510 QREYHLPAGD---FPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKN 563
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 185 CRSDCTYCVTSCIFFGSLAGVEYSFSVFLTILSGFG 78
C ++C+ C +C+ S G++Y VF T G+G
Sbjct: 518 CGANCS-CNNNCVNRTSQKGLQYRLEVFKTASKGWG 552
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 27.5 bits (58), Expect = 6.6
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +1
Query: 100 KNTENEYSTPASDPKNMQEVTQYVQSLLQNMQD---KFQSMSDQIINRIDEMGSRVDELE 270
K TE E A + K+ E+T+ S L++++D K Q+ D ++N+I ++ DE+
Sbjct: 372 KITELEKRIKALE-KDKGELTKKRDSALKDVEDRKIKSQAQFDVLVNKIKKLEGARDEVA 430
Query: 271 KNITDLMTQAGVENEK*K*FSSINL 345
T L+ N F+++ +
Sbjct: 431 NAATPLIQAMFFNNNGPSSFNAVEI 455
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +1
Query: 178 LLQNMQDKFQSMSDQIINRIDE---MGSRVDELEKNITDL 288
++++ +DKF+ + +Q +N I E + + ++EL+ I +L
Sbjct: 336 MIKSAKDKFEHLQNQYVNLISENNALQTEIEELKSRIIEL 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,977,442
Number of Sequences: 37544
Number of extensions: 221039
Number of successful extensions: 651
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -