Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f19
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    26   1.3  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    24   5.3  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    23   9.2  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    23   9.2  

>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 262 EQTAKEKELDSGTPENE 312
           +QT KEK++DS + ENE
Sbjct: 108 QQTEKEKDVDSASAENE 124


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 72  ENNKGITLISAKRSLQAHTAQHN 4
           E  + I LI  KRSL   T  HN
Sbjct: 415 ERKENIGLIGVKRSLHDSTTSHN 437


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 267 LFMDMGVAINLWFKCINIG*LLDATF 190
           +F++M   I+LW   I++G L++AT+
Sbjct: 184 IFVEMA-EISLWGNAIDLGLLVNATY 208


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 59  PLLFSIGLKNLSRAWVLNKAKDRST*AARKRKALERW 169
           P+LF  GL   S +WV N  K+ +   A   +  + W
Sbjct: 120 PVLFIHGLMMNSESWVCNLKKEDAIPFALVEQGYDVW 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,177,178
Number of Sequences: 5004
Number of extensions: 16556
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)