Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f19
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070     28   1.6  
06_02_0001 - 10431189-10432634                                         26   6.4  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    26   6.4  

>03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070
          Length = 143

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 264 FMDMGVAINLWF-KCINIG*LLDATFTTSAGCGHLSSAFRFLA 139
           F D G+    W+  CI  G + +     S  CGH  + + FLA
Sbjct: 29  FDDYGLCCMTWWCPCITFGRVAEIVDRGSTSCGHSGALYVFLA 71


>06_02_0001 - 10431189-10432634
          Length = 481

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 192 FTTSAGCGHLSSAFRFLAA 136
           F  SAG GHL   FRF+ A
Sbjct: 25  FVPSAGMGHLLQFFRFIGA 43


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 123 SFALFSTHARERFFNPIENNKGITLISAKRSLQAH 19
           +FA  +T A ++   P  N    TL+S  RSL+ H
Sbjct: 434 AFAQRATIAAQQLLRPYRNCSICTLVSTSRSLRFH 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,532,419
Number of Sequences: 37544
Number of extensions: 106418
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)