Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f19
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical p...    27   3.3  
U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine rece...    27   4.3  
U80027-4|AAC48121.1|  344|Caenorhabditis elegans Serpentine rece...    26   7.5  

>Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical
           protein M153.5 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 201 DATFTTSAGCGHLSSAFR 148
           DA+F+T  GCG   SAFR
Sbjct: 133 DASFSTIGGCGAFPSAFR 150


>Z99283-7|CAB16537.2|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
 Frame = -3

Query: 255 MGVAINLWFKCINIG*LLDATFTTSAGCGH-LSSAF----RFLAAYVDRSFALFSTHARE 91
           M +   LW +C++     ++     AG  + L S+F      ++ Y ++  ALFS H  +
Sbjct: 555 MTLLSRLWLRCLSDSLAEESYSAKVAGLNYELESSFFGVQMRVSGYAEKQ-ALFSKHLTK 613

Query: 90  RFFN-PIENNK-GITLISAKRSLQAH 19
           R FN  I+  +  +   S KR L  H
Sbjct: 614 RLFNFKIDQTRFDVLFDSLKRDLTNH 639


>Z92782-14|CAI46605.1|  985|Caenorhabditis elegans Hypothetical
           protein Y70C5C.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
 Frame = -3

Query: 255 MGVAINLWFKCINIG*LLDATFTTSAGCGH-LSSAF----RFLAAYVDRSFALFSTHARE 91
           M +   LW +C++     ++     AG  + L S+F      ++ Y ++  ALFS H  +
Sbjct: 555 MTLLSRLWLRCLSDSLAEESYSAKVAGLNYELESSFFGVQMRVSGYAEKQ-ALFSKHLTK 613

Query: 90  RFFN-PIENNK-GITLISAKRSLQAH 19
           R FN  I+  +  +   S KR L  H
Sbjct: 614 RLFNFKIDQTRFDVLFDSLKRDLTNH 639


>U80027-3|AAC48131.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein7 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 174 CGHLSSAFRFLAA-YVDRSFALFSTHARERFFNPI 73
           CG +S ++  L   +V R  ALF  H    FF PI
Sbjct: 97  CGFISISYALLIIHFVYRYMALFYPHKLHLFFRPI 131


>U80027-4|AAC48121.1|  344|Caenorhabditis elegans Serpentine
           receptor, class j protein8 protein.
          Length = 344

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 174 CGHLSSAFRFLAA-YVDRSFALFSTHARERFFNPI 73
           CG +S ++  L   +V R  ALF       FF+PI
Sbjct: 97  CGFISLSYALLIIHFVYRYIALFHPELHRNFFHPI 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,432,493
Number of Sequences: 27780
Number of extensions: 90955
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)