Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f17
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   1.8  
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    24   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 348 LTKISKPTRRKYKINPKITASASTVXITISTAPRY-ANSVL--RNVRNSPLST*TSWWLX 178
           LT ++  +       P  +A+++T     STAP Y  +SVL   +V ++PLS+  S    
Sbjct: 375 LTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTAT 434

Query: 177 SA 172
           SA
Sbjct: 435 SA 436



 Score = 26.2 bits (55), Expect = 1.8
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 348 LTKISKPTRRKYKINPKITASASTVXITISTAPRY-ANSVL--RNVRNSPLST*TSWWLX 178
           LT ++  +       P  +A+++T     STAP Y  +SVL   +V ++PLS+  S    
Sbjct: 489 LTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTAT 548

Query: 177 SA 172
           SA
Sbjct: 549 SA 550


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 346 DQDKQANKEEIQNQS 302
           D+D++ NKE +QN S
Sbjct: 41  DEDEEENKESLQNDS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,809
Number of Sequences: 5004
Number of extensions: 19019
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)