Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f17
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0106 - 18034965-18034975,18035128-18035323,18036320-180364...    27   5.3  
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214...    26   9.2  

>05_04_0106 -
           18034965-18034975,18035128-18035323,18036320-18036412,
           18037219-18037264,18037411-18037538,18037892-18037959,
           18038058-18038084,18038181-18038291,18038404-18038482
          Length = 252

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 208 TQHVDLLVAXISPLXERXAAKSISKKNAVSQKCATRIRADI 86
           TQ+ ++ +A + P  +R   +S+ + +   + C   +RADI
Sbjct: 167 TQYAEIPLAVVRPPYQRVGFESVGEVDTKGKICRIPVRADI 207


>11_06_0553 -
           24920428-24921057,24921149-24921276,24921372-24921409,
           24921522-24921734,24921906-24921998,24922089-24922276,
           24922396-24922502,24922614-24922775,24922870-24922953,
           24923060-24923168,24923340-24923468,24923504-24923556,
           24923654-24923759,24924082-24924189
          Length = 715

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 325 KEEIQN-QS*DYSICFHSXYHNLNGAALCQ-LCIKKC 221
           KEE  N +  DY   FH   H ++ + LC  L I KC
Sbjct: 82  KEEFNNHKDYDYLFRFHFEVHTIDVSLLCMWLIIAKC 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,492
Number of Sequences: 37544
Number of extensions: 122120
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)