Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f16
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0276 - 11485123-11485136,11486549-11487557                       28   1.9  
09_01_0128 + 1932721-1935181,1936099-1936256                           28   2.5  
06_01_0769 - 5745324-5746970                                           27   3.4  
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    27   5.9  

>05_03_0276 - 11485123-11485136,11486549-11487557
          Length = 340

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 176 NSDNNPQNLANSYST-NHGSC 235
           N+DNNP N     +T NHGSC
Sbjct: 292 NTDNNPSNTNGDDTTNNHGSC 312


>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 287 SHARENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQN*KRFSPYSHNQHFL 135
           SH +E H +C   ++   +   +  N L   E +    +R++  S  +HFL
Sbjct: 328 SHGQETHPFCSGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFL 378


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 284 HAR-ENHSYCDCDNRLVDNFHDL*NNCLLSSEDYY 183
           H R +NH++C+ D+R++D F    N  +L S+ Y+
Sbjct: 254 HLRLQNHTFCEEDHRVLDRF----NWMVLRSDSYF 284


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 248  NRLVDNFHDL*NNCLLSSED---YYQN*KRFS 162
            N LVDNF  L  +CL  ++D   YYQ  ++F+
Sbjct: 1162 NMLVDNFDGLRLDCLTLTDDYRCYYQKKEKFA 1193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,729,947
Number of Sequences: 37544
Number of extensions: 94018
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)