Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f16
         (359 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotei...    27   5.4  
AY071499-1|AAL49121.1|  254|Drosophila melanogaster RE55814p pro...    27   5.4  
AE014296-1472|AAF50402.1|  254|Drosophila melanogaster CG6662-PA...    27   5.4  
AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-P...    27   7.2  

>S68526-1|AAD14015.2|  624|Drosophila melanogaster pol polyprotein
           protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 167 FSPYSHNQHFLIDS*HYPIHLKF 99
           F PY + +HFL+ S H P+   F
Sbjct: 60  FRPYVYGRHFLVQSDHRPLSYLF 82


>AY071499-1|AAL49121.1|  254|Drosophila melanogaster RE55814p
           protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 170 RFSPYSHNQHFLIDS*HYPIHLKFFVYLR 84
           RF PY+H  H ++D+   P H   ++ LR
Sbjct: 28  RFCPYAHRVHLVLDAKKIPYH-AIYINLR 55


>AE014296-1472|AAF50402.1|  254|Drosophila melanogaster CG6662-PA
           protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 170 RFSPYSHNQHFLIDS*HYPIHLKFFVYLR 84
           RF PY+H  H ++D+   P H   ++ LR
Sbjct: 28  RFCPYAHRVHLVLDAKKIPYH-AIYINLR 55


>AE014297-3720|ABC66189.2| 1519|Drosophila melanogaster CG34027-PA
           protein.
          Length = 1519

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 22/87 (25%), Positives = 40/87 (45%)
 Frame = -1

Query: 275 ENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQN*KRFSPYSHNQHFLIDS*HYPIHLKFF 96
           ENHS   C+ +L+ N H   +  + ++E ++   K + P   +   +I      +     
Sbjct: 14  ENHSNKSCETQLIVNIHMNPSFDMENTEKFWVVDKVYDPSKGSTLKIISPYLIVVSRGEP 73

Query: 95  VYLRPLRKIFNT*NLQIIFKFSYKLNN 15
           V + PLR + +  N  I  K  Y++NN
Sbjct: 74  VVMYPLRFLKSINNEPISVKPPYEVNN 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,927
Number of Sequences: 53049
Number of extensions: 188981
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)