Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21f14
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical... 31 1.0
AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical... 31 1.0
AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical... 31 1.0
AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid... 31 1.0
U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 29 2.4
AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 29 2.4
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 28 7.2
AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical ... 28 7.2
U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal enha... 27 9.5
>AL032626-21|CAD45606.2| 433|Caenorhabditis elegans Hypothetical
protein Y37D8A.23c protein.
Length = 433
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 198 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 377
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 205 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 264
>AL032626-20|CAD45605.1| 445|Caenorhabditis elegans Hypothetical
protein Y37D8A.23b protein.
Length = 445
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 198 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 377
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>AL032626-19|CAA21537.1| 508|Caenorhabditis elegans Hypothetical
protein Y37D8A.23a protein.
Length = 508
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 198 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 377
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>AF109378-1|AAD19958.1| 508|Caenorhabditis elegans glutamic acid
decarboxylase protein.
Length = 508
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 198 RQRGWFYIRSARGGLHLVANGHIFYEDGGSHPRRVTWRCARSYQKAERCQVALCLRDGRL 377
R + WF++ +A GG L++ H + G VTW + +C L +DG L
Sbjct: 280 RHKLWFHVDAAWGGGMLLSPEHRYKLAGIERANSVTWNPHKLMGALLQCSACLFRQDGLL 339
>U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 303 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQVDPMASVQ 473
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K Q + S
Sbjct: 83 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKSQ---LYSAA 139
Query: 474 AARLSNDDGQLLKISGYWYKLDACYRNK 557
+D G L+ + + + NK
Sbjct: 140 LENPDHDAGDLVNQASMYLSDGVMFDNK 167
>AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal
enhancer binding protein-1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 303 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQVDPMASVQ 473
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K Q + S
Sbjct: 81 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKSQ---LYSAA 137
Query: 474 AARLSNDDGQLLKISGYWYKLDACYRNK 557
+D G L+ + + + NK
Sbjct: 138 LENPDHDAGDLVNQASMYLSDGVMFDNK 165
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +1
Query: 511 RSADIGTSWTPVTATRGDGCAREIAVPVSTQLERRSSSRKSDINAKTTYITPFDSKRI 684
+S T P T+ + + A PV L S K+ KTT + P D K+I
Sbjct: 866 KSISSTTQQAPPTSVQAPPTSCSAAPPVDDLLSEILSGAKTTKTTKTTKMPPVDQKKI 923
>AF016679-7|AAB66161.1| 333|Caenorhabditis elegans Hypothetical
protein T28C12.6 protein.
Length = 333
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -2
Query: 508 NNCPSSLLRRAACTDAIGSTWNFLDS-CLEGLY 413
+ CP C A GS W + DS C GLY
Sbjct: 298 DQCPDPYQLGVKCVAARGSNWCYTDSDCRSGLY 330
>U50199-2|AAP46272.1| 169|Caenorhabditis elegans Pharyngeal
enhancer binding protein1, isoform b protein.
Length = 169
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 303 TWRC--ARSYQKAERCQV-ALCLRDGRLVYFRGSHNHPATYNPSKHESRKFQVDPMASVQ 473
+WRC A+ + C+ A D + +GSHNHP ++ ++ E K + + + Q
Sbjct: 83 SWRCVCAKKMHDGQWCKCRAETTMDNKNACTKGSHNHPPRHHVAEIEFIKVRGE-ITQSQ 141
Query: 474 AARL 485
+RL
Sbjct: 142 LSRL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,085,460
Number of Sequences: 27780
Number of extensions: 350517
Number of successful extensions: 904
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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