Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f09
         (575 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    27   0.58 
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    24   3.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   3.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.4  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 26.6 bits (56), Expect = 0.58
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 258 GEMSRKKMKRFQLPNLPRWWQAKVIQYAFAHPH 356
           G+ S + +  F  PN P WWQ++ +     +P+
Sbjct: 95  GQHSPQFLTDFHDPNNPTWWQSETMFEGVQYPN 127


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 441 IRAVNEENLNKRISSRVLDEMERLKRLILVGKTPLKECPPELF 569
           ++  + + L + I SR   + + L  + +V    L +CPPE+F
Sbjct: 356 LKIASSKVLQRLIKSRGKAQAKNLS-VQMVAAEKLSQCPPEMF 397


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 358 SVRGWRSTWDQTWCGSRTRTT 420
           S+R W+S WD   C ++ RTT
Sbjct: 844 SMRKWQSEWD---CSTKGRTT 861


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 222  KIQVEGEDETGE 257
            K QV+GED+TG+
Sbjct: 1263 KSQVDGEDDTGD 1274


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,032
Number of Sequences: 2352
Number of extensions: 8691
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54665910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)