Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f08
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   0.75 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   0.99 
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    25   1.7  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   2.3  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    24   4.0  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    23   5.3  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    23   5.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   7.0  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    23   9.2  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    23   9.2  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 215 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 111
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 72  ILLEKNVHYRRSLTDRWSRAL 134
           +L +KN  +  S+TD W RAL
Sbjct: 223 VLQKKNAGFNVSITDLWGRAL 243


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 36  LIIYVSFVVELFILLEKNV 92
           L++Y S V+E FIL+EK +
Sbjct: 143 LLVYASNVMEAFILVEKTL 161


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 261 FFLHSTHLLNTN*IIFYYFNYP 196
           F L S+H  NT+ ++FY  +YP
Sbjct: 100 FQLLSSHEYNTDDVVFYDVDYP 121


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 124 LHLSVSERL*CTFFSRRINNSTTNDTYIINYFIQIK 17
           L ++V+E L    F+  I NST    ++++YF Q+K
Sbjct: 303 LSVNVAESLVSENFAN-IGNSTFPTRHVLSYFPQVK 337


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 57  VVELFILLEKNVHYRRSLTDRWSRALYQRDMRLTGNP 167
           V E+  L +KN+H+R+   D  S +  Q D+     P
Sbjct: 5   VEEINKLKKKNLHFRQCSADSLSNSSMQFDLSGLNTP 41


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 81  EKNVHYRRSLTDRWSRALYQRDMRLT-GNP 167
           +K+  +  SLTD W RAL ++ +  T G P
Sbjct: 198 KKDAGFDTSLTDLWGRALSRKLVDATQGGP 227


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 72  ILLEK-NVHYRRSLTDRWSRALYQRDMRLTGNPYEVNGL 185
           ILL+K  +H+ R   + W R+L    + L    +EV  L
Sbjct: 170 ILLKKLKLHFPRRKENSWKRSLRSGLIELLNQSFEVRML 208


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 173 FIRITSKPHIPLVQRTTPS 117
           F + T KP  PL   TTP+
Sbjct: 583 FSKTTIKPETPLTPTTTPT 601


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 36  LIIYVSFVVELFILLEKNVHYRR 104
           LI  VS ++ +FI+L + ++YRR
Sbjct: 29  LITLVSGLIVIFIVLMEWINYRR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,351
Number of Sequences: 5004
Number of extensions: 16713
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)