Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f08
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   2.1  
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202...    25   6.3  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    25   6.3  
04_03_0935 + 20918617-20919299,20919328-20919627,20919680-209198...    25   6.3  
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888...    25   8.3  

>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 249  STHLLNTN*IIFYYFNYPG*LPSHSLHKDYQ*ASY-PSGTTHD 124
            ST L+  N +IFY F     L  H+L KD +   + P  TT+D
Sbjct: 949  STELILYNILIFYLFRRRHILQVHNLLKDMKSNGFSPDTTTYD 991


>08_01_0245 +
           2023442-2023786,2024485-2024841,2024951-2025393,
           2025475-2025569,2026302-2026477
          Length = 471

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 204 NYPG*LPSHSLHKDYQ*ASYPSGTTHDSI 118
           +YPG  P HS  KD   A Y S T  +++
Sbjct: 384 DYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 76   FWKKMCIIDARLLIDGVV 129
            +WKK+C+++ R+L   ++
Sbjct: 1576 YWKKLCLVEVRVLDSSLI 1593


>04_03_0935 +
           20918617-20919299,20919328-20919627,20919680-20919836,
           20921338-20921397,20921554-20921670
          Length = 438

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 81  EKNVHYRRSLTDRWS 125
           EK+ +YR  LT+RWS
Sbjct: 90  EKDKYYRNRLTERWS 104


>06_03_1512 -
           30688098-30688133,30688401-30688537,30688744-30688834,
           30689265-30690815
          Length = 604

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 42  IYVSFVVELFILLEKNVHYRRSLTDRWSRALYQRDMRLTGNPYE 173
           +Y++ + +   +L K+  Y      RW  AL QR    +GN  E
Sbjct: 526 VYLAAIDKFDAMLSKSNTYAPEALYRWGIALQQRSYLRSGNNKE 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,596,550
Number of Sequences: 37544
Number of extensions: 85935
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)