Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f08
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 170 IRITSKPHIPLVQRTTPSISKRASIMH 90
           +R T++  IP+ + T+PS++K A+  H
Sbjct: 90  LRATTRQGIPVAKFTSPSMTKMAASCH 116


>U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical
           protein T13C5.4 protein.
          Length = 220

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 126 RALYQRDMRLTGNPYE 173
           RA Y+R+ + TG+PYE
Sbjct: 96  RAKYRREQKQTGHPYE 111


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 6   MTAPLI--CIK*LIIY--VSFVVELFILLEKNVHYRRSLTDRWS 125
           +T PL+  C   ++ +  V F    +++L K+  YR +  D WS
Sbjct: 234 ITGPLLVFCKSNMVFFALVCFAQPFYVMLWKSSEYRDAFIDMWS 277


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 94  CTFFSRRIN--NSTTNDTYIINYFIQIK 17
           C  F   +N  N  TND YI  YF  IK
Sbjct: 565 CYNFREGLNPGNLVTNDHYIAKYFSDIK 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,243,545
Number of Sequences: 27780
Number of extensions: 87792
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)