Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f07
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   9.3  

>Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 358 IAHTADRAVDTVED*SWHGTGSESNLVEK-TGSLVSH 251
           I  TA+R   T    +  GT SES L+EK   SL+ H
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEH 132


>Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 358 IAHTADRAVDTVED*SWHGTGSESNLVEK-TGSLVSH 251
           I  TA+R   T    +  GT SES L+EK   SL+ H
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEH 132


>Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical
           protein W01A8.8 protein.
          Length = 162

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 139 CLYFTTIMCTPCGPMVCYKYEDCGPPLQCLPRSAFKRNGLQDCQFFQQGS 288
           C   + I   P  P +C KYE      +C P       GL++C  F   S
Sbjct: 13  CTLISVISAKP-DPEICEKYEVVEQKFKCGPDGYPLHFGLRNCLMFNNQS 61


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 158 SCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFATCAVPA 313
           S +L+   W    ++  V RSS  LG   + +      F   +RF  C+ PA
Sbjct: 108 SLILYQIFWIFVVVRDFVRRSSTWLGVFMALVRLMMIKFGAGLRFQKCSKPA 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,937
Number of Sequences: 27780
Number of extensions: 214358
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)