Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f06
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   0.96 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.9  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   3.9  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.1  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    26   5.1  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   6.8  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.0  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    25   9.0  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 202 LLYYVASLS*AVRNVAHYTASMVETAFY 119
           L YY AS S  +R VAH+  S V  ++Y
Sbjct: 35  LSYYAASNSSKLRKVAHFLGSRVRHSYY 62


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 207 RRCRCHSVFRGCSSVFLHTSHPRYTLSNQRTLWVTLLECK*TPV 338
           RR +  +V     S ++H     YT+S +   W+ +L CK  PV
Sbjct: 655 RRGKVITVLNNLGSYYIHF---HYTVSAEEHKWMDVLSCKSVPV 695


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 350 VLGIHFISNHILIRQKALFLIDTILYRIVNPSNHL 454
           ++GI F+S   +I + + F +++I++RI  P N++
Sbjct: 887 IIGIDFMS---VISRGSQFKVESIMFRIAKPENYI 918


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 34  PIHNITDNKNGLIN*YDKINTNASVQSNNKMQFQPLMPCNAPHFAPPSSNLPHN 195
           P   I+D+ N   N  D    + S  +  K   +PL    +P +  PSS  PH+
Sbjct: 23  PKIKISDSPNRHHNLVDAFMQSPSYSTQPKSAVEPLGLSFSPGYISPSSQSPHH 76


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 199 IGEGDVVAIVSSGGVLQYFFTPVTHGIHCPTNAPYGL 309
           I   ++  +V S   + Y FT +  G +C +N  YGL
Sbjct: 297 IAVANICMLVFSIVTIIYLFTTIVVGFYCISNFGYGL 333


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 294 VGWTVYTVGDWCEEILKNTP*RHYGNDIAFPYYIMWQV*ARRCEMW 157
           +G TVY+  ++ + + +  P +   ND  FPY + WQ  +R    W
Sbjct: 187 LGITVYST-EFGKVLGRLEPPKRLPNDEIFPYQLFWQSESRLVIGW 231


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  NASVQSNNKMQFQPLMPCNAPHFAPPSSNLP-HNIIGEGDVVAIVSSGGVLQYFFTPVTH 273
           +  V +      Q L   N P F P  + +  H  + + D+V    S  +    ++P+TH
Sbjct: 142 SVGVSNYGVKHLQELYASN-PKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPLTH 200

Query: 274 GI 279
           GI
Sbjct: 201 GI 202


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 202 LLYYVASLS*AVRNVAHYTASMVETAFYCY 113
           LLY V +LS A+     YT +   T+F+ Y
Sbjct: 9   LLYEVTALSTAIHVTKSYTHTRTGTSFFMY 38


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 316 NKVTHKVRWLDSVYRG*LV*RNTEEHPLKTL 224
           N++TH++   DS Y    V  N++ + +KTL
Sbjct: 227 NELTHQLNMADSKYNESKVANNSQNNQIKTL 257


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +1

Query: 151 NAPHFAPPSSNLPHNIIGEGDVVAIVSSGGVLQYFFTPVTHGIHCPTNAPYGLPYWNANK 330
           +AP  AP +  L   ++ EGD + I     V+     P   G   P          +A K
Sbjct: 85  DAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAPPEGGSAGPKKDEVKTADADAAK 144

Query: 331 PLWFVRSIGDPFHIQPYPN 387
            L   +    P   +P P+
Sbjct: 145 DLSTPQDSSKPIEEKPMPD 163


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 523 DVSTDKNNVNQSL-TSNDHCETLNQMVGRVDYP 428
           DV ++    +  L T N+H E  +  VG+ D+P
Sbjct: 86  DVMSNSTEADLQLHTKNEHLEKRHSFVGKSDFP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,369
Number of Sequences: 5004
Number of extensions: 64011
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)