Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21f05
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.1  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.1  

>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 399  ASIYMQ*ATQKPRKKFSTKAVHRPHCLYDSCMATIPPPRQ 280
            AS+Y+Q A      K S  A+H     YD    T+ P  Q
Sbjct: 1109 ASLYLQLAQLMVLNKDSRSALHAVRVAYDILKETLGPDHQ 1148


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 149 PSDSTSKYQLKATGEAAKNYDFTKARPPAKTTNVIES 259
           PS S + Y + +     ++YD  K  PP  T+ V  S
Sbjct: 55  PSSSGTMYPMASRDSMKESYDKNKGTPPDYTSYVSHS 91


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 140 TNAPSDSTSKYQLKATGEAAKNYDFTKARPPAKTTNVIESIGHLIK 277
           ++A +D  ++ Q K+   A K+Y  T   P + +    +S  H+IK
Sbjct: 413 SSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRADSTSHIIK 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,670
Number of Sequences: 5004
Number of extensions: 50436
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)