Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e24
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.0  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   2.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.1  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 552 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 442
           VFPS N  G R + +P    + T  D GE   P  PP
Sbjct: 459 VFPSINSFGRRHSNLP----QTTHVDTGEQNTPFTPP 491


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 543 SCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 442
           +C G G RL  IPP+   +T  D   G     PP
Sbjct: 259 ACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPP 292


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 510 IPPAPFEETRADCGEGAPPPDPPTHSLPEPSFNQEE 403
           IPP  +   +AD     PPP PPT  LP  S N  +
Sbjct: 223 IPPT-YTPKQADPLPAPPPPPPPT--LPPQSTNTSQ 255


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 582 CVKHQFSATGVFPSCNGLGTRLTAI 508
           CV  +F  TGV P  + +G RLT I
Sbjct: 189 CVPVEFQLTGVKPENSKVGWRLTKI 213


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 344 EKSSGFGTKSLPLPCFPSAMRGPFLIELRMTS 249
           EKSS F    LP+P   + +  P  I ++ T+
Sbjct: 621 EKSSNFSCLQLPIPVLNTPILTPVTINIQSTT 652


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 516 TAIPPAPFEETRADCGEGAPPPDPPTHSLP 427
           T   P P   +RA     APPP  P  S P
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,205
Number of Sequences: 5004
Number of extensions: 34856
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)