Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e23
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   4.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.3  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 433  LQRVTYTNFRVWSLPSNSSLHNMSISLYW 347
            L R TY++ R+ S PS+S  H  S S  W
Sbjct: 944  LLRYTYSDERIESYPSDSRFHFNSSSKSW 972


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 179 LLRLISCRLVCSEGSVLRTRQSTGTIEVTLTFQL 78
           ++ L++C L+  EG V+RT    G  ++   +QL
Sbjct: 448 MIDLLTCTLIEVEGEVMRTSIKKGEPKILYPYQL 481


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 163 EMSLSNPTTLTAIEKMNRSMSVWNVYQHHYEHSKEVSFDAQ 285
           +MSL N + L     +  S+ + ++Y H Y H  + SF +Q
Sbjct: 60  DMSLGNLSELNVATDLLESLDLRSMYMHGYGH-LDSSFSSQ 99


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 717  NKH*KLRTWSNFSTLKLSLPLNQNVTTTSDYIKMVKSFK 601
            N H +  +W  F  L L++     V+ +SD+I + K  K
Sbjct: 4090 NVHLEEFSWGTFKDLLLNVVYGPKVSASSDFIALDKILK 4128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,740
Number of Sequences: 5004
Number of extensions: 67983
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)