Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e23
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 32 0.40
04_01_0103 + 1082077-1082167,1083037-1085477 30 2.1
02_04_0017 + 18937774-18937864,18938505-18940945 30 2.1
01_06_0662 + 30987187-30987277,30987825-30990214 28 6.5
11_06_0750 + 26917239-26918071,26918319-26920773 28 8.6
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 8.6
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 28 8.6
03_02_0662 - 10250235-10250433,10250692-10253105 28 8.6
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 8.6
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +1
Query: 10 SI*ALTGPCKI*FTNLFQTYRIMS*NVSVTSIVPVDCLVLRTLPSLQTSLQEMSLSNPTT 189
S+ +LTGP F NL Q ++ ++T ++P + + L SL + + P T
Sbjct: 438 SVNSLTGPIPSSFGNLKQLTKLALFFNNLTGVIPPEIGNMTALQSLDVNTNSLHGELPAT 497
Query: 190 LTAIEKMNRSMSVWNVYQHH 249
+TA+ RS+ V+ +H
Sbjct: 498 ITAL----RSLQYLAVFDNH 513
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 70 RIMS*NVSVTSIVPVDCLVLRTLPSLQTSLQEMSLSNPTTLTAIEK 207
R M +VS V V C V LP L L+ ++ S+P L IE+
Sbjct: 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEE 524
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 70 RIMS*NVSVTSIVPVDCLVLRTLPSLQTSLQEMSLSNPTTLTAIEK 207
R M +VS V V C V LP L L+ ++ S+P L IE+
Sbjct: 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEE 524
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 70 RIMS*NVSVTSIVPVDCLVLRTLPSLQTSLQEMSLSNPTTLTAIEK 207
+ M +VS V V C V LP L L+ ++ S+P L +E+
Sbjct: 475 KAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTVEE 520
>11_06_0750 + 26917239-26918071,26918319-26920773
Length = 1095
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +1
Query: 118 CLVLRTLPSLQTSLQEMSLSNPTTLTAIEKMNRSMSVWNVYQHHYEHSKEVSFDAQLRRQ 297
C V++ + S T++++ +LSN +L + + + + H +H KE++ D+ + Q
Sbjct: 942 CFVMKIMTSALTTIEQGALSNLVSLQLL--CQGLVGLSGIEIRHLKHLKEITIDSAVTVQ 999
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Frame = +3
Query: 168 EPEQPDN-----TDCHRKDEQVNVCLE-CISTS 248
EPEQPDN T+C +D +CL+ CI+ S
Sbjct: 269 EPEQPDNSMCAVTECMEEDTGELICLDPCIAES 301
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 493 RIIYKSILGLYWRRRGGSRNLQRVTYTNFRVWSLPSNS 380
R +YKS+ L+ R + RN+ T T+ R++ PS S
Sbjct: 61 RRLYKSLKFLHGRGKYTKRNITESTVTDVRLFPSPSKS 98
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 213 QVNVCLECISTSLRTLKRSFIRCSAQATITHLKKFVAKKVLNGI---DQYREIDILCNDE 383
QV + + LRT+ ++ Q H + ++ ++ N + R IL +
Sbjct: 5 QVLLAAQSHDGQLRTVAEENLKQFQQQNFPHFLQTLSVELSNDENPPESRRLAGILLKNS 64
Query: 384 LLGKDHTLKFVYVTRWRFRDPPLRLQYRPKI 476
L K+ T K +V RW DP ++ Q + +
Sbjct: 65 LDAKESTRKEEFVQRWMNVDPAIKSQVKESL 95
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 45 VYKLVPDLQDNELKRERDFYRARGLP 122
++K+VP+L N K E D Y G+P
Sbjct: 107 LHKMVPELNGNASKLELDIYEEIGIP 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,571,596
Number of Sequences: 37544
Number of extensions: 406433
Number of successful extensions: 1219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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