Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e23
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.96 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 3   PLQYISFDRTMQDIVYK 53
           PLQ+ SF  T +D++YK
Sbjct: 145 PLQFGSFGYTKRDVIYK 161


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 215 GQCLFGMYINIITNTQKKFHSM 280
           G C FG+ ++ +TN   +F  M
Sbjct: 187 GSCAFGIDMSSMTNENSEFRRM 208


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 436 NLQRVTYTNFRVWSLPSNSSLHNMSISLYWSIPFN 332
           +   +   N  +   P+ S L+++ ISL  S P N
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMN 163


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 436 NLQRVTYTNFRVWSLPSNSSLHNMSISLYWSIPFN 332
           +   +   N  +   P+ S L+++ ISL  S P N
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMN 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,640
Number of Sequences: 438
Number of extensions: 4587
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)