Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e21
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 32 0.33
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF025452-3|AAB70939.2| 198|Caenorhabditis elegans Hypothetical ... 29 3.1
AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical ... 28 4.1
U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z35400-1|CAA84584.1| 532|Caenorhabditis elegans putative transp... 27 7.2
U12433-1|AAA20582.1| 532|Caenorhabditis elegans putative transp... 27 7.2
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 9.5
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 9.5
AF016674-4|AAB66130.1| 287|Caenorhabditis elegans Hypothetical ... 27 9.5
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 60 LYEDGHWEWNENTNTLHFISDLPPQPVETIQISTKA 167
LYE+ +EWN+ + + PP P T+ I T A
Sbjct: 362 LYENPFYEWNQENRKRNERAQCPPSPQRTLGIQTSA 397
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 306 TAPVGILSPVLINMLHLPTTERFLRALILCCQYYLQIA--DEMANRIIELEAKVRTPDCE 479
T + + S +L ++ + + + L C+ + I D+ +R I E KVR PDCE
Sbjct: 7 TELISLPSELLCHLFTYLPQRQLITEIPLVCRRFNTILNDDKFWSRRIRTEQKVRLPDCE 66
Query: 480 IIENEY 497
+ EY
Sbjct: 67 LKHPEY 72
>AF025452-3|AAB70939.2| 198|Caenorhabditis elegans Hypothetical
protein B0454.5 protein.
Length = 198
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 DLIEQIRFRRRYQRKLQ-PGQADVITLQDVKDIAIFTAPVGILSPVLINML 350
D IE R RRRYQRK + P +D L+D + F P G + VL+N+L
Sbjct: 96 DAIE--RLRRRYQRKRESPLPSDDGELRDATGRSGFPYPCGYIH-VLLNIL 143
>AL031627-4|CAA20957.1| 230|Caenorhabditis elegans Hypothetical
protein Y102A5C.13 protein.
Length = 230
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = +3
Query: 105 LHFISDLPPQPVETIQISTKAPTGAIEFRDDVDLIEQIRFRRRYQRKLQPGQADVITLQD 284
L F+S P+ +ETI I+ + E +D++E +++R + + +++
Sbjct: 83 LSFLSHFKPEFLETIIIAQNGVENSGEICKFIDIVESEQWKRAKSIYVYSIISSNFPIEN 142
Query: 285 VKDIAIFTAPVGILS 329
+ + +F P+G L+
Sbjct: 143 LFHLTVFCVPLGELA 157
>U58734-6|AAB52505.3| 383|Caenorhabditis elegans Hypothetical
protein T27A10.7 protein.
Length = 383
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 188 KLYGSSGRFC*YLNSFHWLWR 126
K+YG SG++ FHWLWR
Sbjct: 304 KMYGESGKY------FHWLWR 318
>Z35400-1|CAA84584.1| 532|Caenorhabditis elegans putative
transposase protein.
Length = 532
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 30 ADDEEGVFGGLYEDGHWEWNENTNTLHFISD 122
+DDEE VFGG+ ++ W+ +++ + + D
Sbjct: 52 SDDEEEVFGGIVDEEDWKPDDDDPSACVVPD 82
>U12433-1|AAA20582.1| 532|Caenorhabditis elegans putative
transposase protein.
Length = 532
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 30 ADDEEGVFGGLYEDGHWEWNENTNTLHFISD 122
+DDEE VFGG+ ++ W+ +++ + + D
Sbjct: 52 SDDEEEVFGGIVDEEDWKPDDDDPSACVVPD 82
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 450 EAKVRTPDCEIIENEYRDNLADLRL 524
EAK+ T +C+ E+ YRD + +L +
Sbjct: 1077 EAKLSTKECQNAESNYRDAIIELAI 1101
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 450 EAKVRTPDCEIIENEYRDNLADLRL 524
EAK+ T +C+ E+ YRD + +L +
Sbjct: 1063 EAKLSTKECQNAESNYRDAIIELAI 1087
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 450 EAKVRTPDCEIIENEYRDNLADLRL 524
EAK+ T +C+ E+ YRD + +L +
Sbjct: 1063 EAKLSTKECQNAESNYRDAIIELAI 1087
>AF016674-4|AAB66130.1| 287|Caenorhabditis elegans Hypothetical
protein C03H5.3 protein.
Length = 287
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 33 DDEEGVFGGLYEDGHWEWNENTNTLHFISDLPPQPVETIQISTKAPTGAIEFRDDVD 203
DD+E V YED + E + N + + E ++IS+K P +IE ++ D
Sbjct: 110 DDDEVVPETDYEDNNEEPKNDQNPVEIPDNSDSDDDEPMEISSKNPVTSIENPENSD 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,248
Number of Sequences: 27780
Number of extensions: 284933
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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