Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e20
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   2.3  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   2.3  
06_03_0683 - 23490215-23490997                                         28   4.1  
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643...    27   5.4  
05_03_0070 - 8023343-8023528,8023606-8023639,8024013-8024058,802...    27   7.2  
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125...    27   9.5  

>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 169  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 258
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 146 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -2

Query: 153 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 19
           ++TG   ++L++  + +T     K + +  +R E I++D+R+  S
Sbjct: 76  IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120


>01_01_0826 +
           6431621-6431917,6432356-6432505,6432614-6432796,
           6433305-6433385,6433548-6433586,6433646-6433849,
           6433933-6434073,6434270-6434437,6434498-6434518
          Length = 427

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 168 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSS 16
           N S  ME    I  L RAG  VTVA     ++   RR + N+  DI V  ++
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAA 308


>05_03_0070 -
           8023343-8023528,8023606-8023639,8024013-8024058,
           8024139-8024389,8024473-8026001,8026128-8026496,
           8026582-8026821
          Length = 884

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 238 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKE 62
           K G+  P+RSKQ   +KV P + + V  N  G + +     R ++ +   GE   NRK+
Sbjct: 78  KEGEMAPRRSKQEPKKKV-PSKDDDVPANTTGTKKS----ERSAKAKKRKGERSVNRKD 131


>12_02_0338 -
           17712076-17712261,17712339-17712431,17712533-17712593,
           17712681-17712791,17712872-17713123,17713207-17714543,
           17714649-17715317,17715403-17715642
          Length = 982

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 238 KSGDQLPQRSKQTEWRKVQPWERELVICNGDGLRDNFFVPGRQSRYRCETGESDENRKE 62
           K G+  P+RSKQ   +KV P + + V  N  G + +     R ++ +   GE   NRK+
Sbjct: 78  KEGETAPRRSKQQPKKKV-PSKDDDVPANTTGTKKS----ERSAKAKKRKGERSVNRKD 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,181,373
Number of Sequences: 37544
Number of extensions: 166502
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)