Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e19
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0154 + 5055946-5058721,5058754-5058770                           29   3.0  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    29   3.0  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    28   5.2  
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988...    28   5.2  

>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 423 WGFSSSFFFNFITDLINFFVYFIPININVAFLACNV*KND 304
           W  + +   N++T ++N    ++P N+   FL C++   D
Sbjct: 407 WQLTKNQKLNYVTSILNLSFDYLPANLKNCFLYCSMFPED 446


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 524 ISLVMTNTVLQNHMSFWQHFLLEWLLGLICG 616
           IS+++ NT+     S+W       LLGL+CG
Sbjct: 174 ISIIIFNTLFGLSSSYWMALTSRGLLGLMCG 204


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 331 KGYIDINWDKINKKVDKISDKIEKEATGKSPDWFEKVERF 450
           K  +DI   ++ K+  ++   +EKE   +S DW  ++ RF
Sbjct: 410 KKELDIRTRRLEKEKMEVQTTLEKEMDRRSDDWSIRLSRF 449


>01_01_1224 -
           9888726-9888820,9889042-9889085,9889194-9889282,
           9889390-9889434,9889849-9889956,9890042-9890127,
           9890324-9890411,9890669-9890872,9891251-9891326,
           9891429-9891478,9891753-9891815,9891942-9891995,
           9892079-9892181,9892266-9892368,9892563-9892623,
           9892746-9892786,9893183-9893348
          Length = 491

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 524 ISLVMTNTVLQNHMSFWQHFLLEWLLGLICG 616
           +S+++ NT+     ++W   +   LLGL+CG
Sbjct: 122 LSVIVFNTLFGLSTTYWMAIVTRGLLGLLCG 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,672
Number of Sequences: 37544
Number of extensions: 189290
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)