Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e19
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-5|CAA88970.1|  138|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine r...    28   6.1  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    28   6.1  
Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    27   8.1  

>Z49130-5|CAA88970.1|  138|Caenorhabditis elegans Hypothetical
           protein T06D8.7 protein.
          Length = 138

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 25/102 (24%), Positives = 41/102 (40%)
 Frame = +1

Query: 112 KNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLILGTASGWITGFISMXXXXXXXXX 291
           KN+  S +A K V DA + +   + D+ K     QL +G   G +TG+            
Sbjct: 6   KNDGGSGKAGKGVSDAIDTVLYYVVDLKKQQPMVQLGVGAGFGTVTGYFVTKGGRLVAAT 65

Query: 292 XXXXXXXXXXXSQKGYIDINWDKINKKVDKISDKIEKEATGK 417
                        KGYI +N  KI + +  +   +  + +GK
Sbjct: 66  VGISFLLAQFAIHKGYITLNESKIERDMKNLHKSVMNKVSGK 107


>AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein3 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 450 KSFHLFKPIWGFSSSFFFNFITDLINFFVYFIPININV 337
           K F  FKP     + FF NF + +  F+V+FI   I V
Sbjct: 170 KRFGTFKPYMWCDNCFFMNFSSKI--FYVFFIVAGIAV 205


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 405 FFFNFITDLINFFVYFIPININVAFLACN 319
           F  +++ ++I F  + +PI + +++L CN
Sbjct: 261 FDIDYVLEIIPFDCFLLPIIVQISYLGCN 289


>Z49968-8|CAE17875.1|  144|Caenorhabditis elegans Hypothetical
           protein M110.9 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +1

Query: 355 DKINKKVDKISDKIEKEATGKSPDWFEKVER 447
           ++INK++DK+ +K++++   +   W  +VE+
Sbjct: 40  EQINKEIDKLVEKLDEKTKQEHKAWKLRVEK 70


>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 453 YKSFHLFKPIWGFSSSFFFNFITDLINFFVYF 358
           Y+ +H   PIW F   F F+  T L   FV+F
Sbjct: 116 YRIYHPIIPIWPF---FLFSLSTGLFQDFVFF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,366,304
Number of Sequences: 27780
Number of extensions: 190339
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)