Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e15
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 1.5
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 26 3.4
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 4.5
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 4.5
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 5.9
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 5.9
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 25 7.8
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 7.8
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 7.8
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 7.8
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 14 NQSVINHTFGNSFRFYFYFRTDINQRWAVTRNARSAHVWPSTYTCLT 154
N+ I+ S +F+F D + VT A +VWP T T +T
Sbjct: 1614 NEVTISELTSESGCLFFHFEKDDSGIDHVTAVASHFNVWPDTQTVMT 1660
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 29 NHTFGNSFRFYFYFRTDINQRWAVTRNARSAHVWPST 139
+ + N FR FYF D + + R + + WPST
Sbjct: 174 DESISNEFRESFYFGNDNLSKDRLLRPFQGPNKWPST 210
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +2
Query: 89 RWAVTRNARSAHVWPSTYTCLTRS----YTGKSNISGTIKFTDPISDQSLLLVN 238
RWAVT N HV T T +T GK+ G K I S L+VN
Sbjct: 928 RWAVTNNTNIVHVTELTGTSITTKGNFYLPGKNPEPGEEKLYLWIEGPSELVVN 981
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 11 INQSVINHT---FGNSFRFYFYFRTDINQRWAVTRNARSAHVW 130
I +S++N++ ++ + Y + DI RW + N R A VW
Sbjct: 332 IYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAPVW 374
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 464 LVFSLSFFGW*KRLSLLFILTSGVVYQPYSWFSVA 360
LV SL++F W L ++F+L +G VY P S + A
Sbjct: 193 LVISLTYF-W-GLLFVIFLLGNGFVYVPVSMWKKA 225
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 338 HKANIRRRPLRTKSTAGTPHRSSK*TGAINVSTSRRRKAK 457
H+ R+P + K+ T +S T TSR K+K
Sbjct: 147 HQTRATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSSKSK 186
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = -1
Query: 379 TLGSQWPATDICFVVPSPWSGRRCDSNRPLFSFAPRIRLLADHERRRI 236
TL +PA D C +P W+ +P SF + D R I
Sbjct: 177 TLQPSFPAADFCHSIPPQWNQLSFFRVKPGHSFHDVEEVYVDKPRMAI 224
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 250 HDQLKAESEEQTKKVDDYYHNVAQTRAK 333
+D+ +A EE +DD YH + + K
Sbjct: 58 YDESRATQEETETNLDDEYHRLGEREPK 85
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 276 GANEKSGRLLSQRRPDQGEGT 338
G+N+K+ R S+ RPD E T
Sbjct: 378 GSNDKTTRFWSRSRPDDKEST 398
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 507 FFRLGIRH*DNYFDFGVFAFLLRLVETFIAPVHFDERCGVPAV 379
F +GIRH + YF+ G L LV+ FI E GV AV
Sbjct: 243 FENVGIRHKEMYFEDGTVP-ELSLVKEFIDLTEEVEEDGVIAV 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,111
Number of Sequences: 5004
Number of extensions: 48024
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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