Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e15
(571 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z21488-1|CAA79696.1| 1018|Homo sapiens contactin protein. 30 5.0
U07820-1|AAA67921.1| 1007|Homo sapiens h-contactin 2 precursor p... 30 5.0
U07819-1|AAA67920.1| 1018|Homo sapiens h-contactin 1 precursor p... 30 5.0
BC036569-1|AAH36569.1| 627|Homo sapiens CNTN1 protein protein. 30 5.0
DQ230534-1|ABA64474.1| 531|Homo sapiens RAP1 long isoform protein. 30 6.6
DQ230533-1|ABA64473.1| 491|Homo sapiens RAP1 protein. 30 6.6
BT007107-1|AAP35771.1| 491|Homo sapiens putative Rab5 GDP/GTP e... 30 6.6
BC036239-1|AAH36239.2| 663|Homo sapiens chromosome 3 open readi... 30 6.6
BC015330-1|AAH15330.1| 491|Homo sapiens RAB guanine nucleotide ... 30 6.6
AK223329-1|BAD97049.1| 491|Homo sapiens RAB guanine nucleotide ... 30 6.6
AJ250042-1|CAB57359.1| 491|Homo sapiens Rab5 GDP/GTP exchange f... 30 6.6
AC027644-1|AAQ93362.1| 491|Homo sapiens unknown protein. 30 6.6
>Z21488-1|CAA79696.1| 1018|Homo sapiens contactin protein.
Length = 1018
Score = 30.3 bits (65), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 140 YTCLTRSYTGKSNISGTIKFTDP 208
YTC + GK+N +GT+ TDP
Sbjct: 482 YTCFAENNRGKANSTGTLVITDP 504
>U07820-1|AAA67921.1| 1007|Homo sapiens h-contactin 2 precursor
protein.
Length = 1007
Score = 30.3 bits (65), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 140 YTCLTRSYTGKSNISGTIKFTDP 208
YTC + GK+N +GT+ TDP
Sbjct: 471 YTCFAENNRGKANSTGTLVITDP 493
>U07819-1|AAA67920.1| 1018|Homo sapiens h-contactin 1 precursor
protein.
Length = 1018
Score = 30.3 bits (65), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 140 YTCLTRSYTGKSNISGTIKFTDP 208
YTC + GK+N +GT+ TDP
Sbjct: 482 YTCFAENNRGKANSTGTLVITDP 504
>BC036569-1|AAH36569.1| 627|Homo sapiens CNTN1 protein protein.
Length = 627
Score = 30.3 bits (65), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 140 YTCLTRSYTGKSNISGTIKFTDP 208
YTC + GK+N +GT+ TDP
Sbjct: 482 YTCFAENNRGKANSTGTLVITDP 504
>DQ230534-1|ABA64474.1| 531|Homo sapiens RAP1 long isoform protein.
Length = 531
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 216 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 254
>DQ230533-1|ABA64473.1| 491|Homo sapiens RAP1 protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
>BT007107-1|AAP35771.1| 491|Homo sapiens putative Rab5 GDP/GTP
exchange factor homologue protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
>BC036239-1|AAH36239.2| 663|Homo sapiens chromosome 3 open reading
frame 44 protein.
Length = 663
Score = 29.9 bits (64), Expect = 6.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 253 DQLKAESEEQTKKVDDYYHNVAQTRAKGPQSKYPSPATENQEYGWYTTPL 402
++ + E EE+ ++V++ V + G + + +P T ++EY W T +
Sbjct: 35 EEEEEEVEEEEEEVEEEEEEVVEEELVGEEQELEAPETFSEEYLWKVTDI 84
>BC015330-1|AAH15330.1| 491|Homo sapiens RAB guanine nucleotide
exchange factor (GEF) 1 protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
>AK223329-1|BAD97049.1| 491|Homo sapiens RAB guanine nucleotide
exchange factor (GEF) 1 variant protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
>AJ250042-1|CAB57359.1| 491|Homo sapiens Rab5 GDP/GTP exchange
factor homologue protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
>AC027644-1|AAQ93362.1| 491|Homo sapiens unknown protein.
Length = 491
Score = 29.9 bits (64), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 274 EEQTKKVDDYYHNVA---QTRAKGPQSKYPSPATENQEY 381
EEQ++ D+YHNVA QTR K P + + ++Y
Sbjct: 176 EEQSECAQDFYHNVAERMQTRGKVPPERVEKIMDQIEKY 214
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,915,821
Number of Sequences: 237096
Number of extensions: 1606732
Number of successful extensions: 7736
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7732
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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