Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e08
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 31 0.54
02_02_0393 - 9711835-9712388,9712438-9712657,9713007-9713271,971... 31 0.71
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125... 30 1.2
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 29 3.8
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 8.8
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939... 27 8.8
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 8.8
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 427 DQPRHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGI 543
D RHF P + R V F+P+ G ++ KV + RG+
Sbjct: 533 DVQRHFRPELISRLTEMVVFRPLSGEQLRKVARLQLRGM 571
>02_02_0393 -
9711835-9712388,9712438-9712657,9713007-9713271,
9713409-9713476,9713587-9714209,9714307-9714462,
9714551-9714648,9714734-9714825,9714928-9715017
Length = 721
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -3
Query: 447 NEVPWLI*--SPTKVQSFKCKISYYNNKNRIDQGQNYNET*NQRSN*LKKRRKRC 289
N VPW+I + T +SF IS N + + Q NYN T N + + KRC
Sbjct: 323 NAVPWVITVAASTIDRSFPTVISLGNKEKLVGQSLNYNSTMNSSNFHMLVDGKRC 377
>11_01_0150 +
1256029-1256137,1256206-1256247,1256345-1256455,
1256538-1256600,1256678-1256910,1256999-1257223,
1257319-1257411,1257493-1257591,1257840-1257956
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 400 EGLYLSWRLDQPRHFI-PSSVMRRALSVAFKPI-PGTEVWKVREVLTRGILLAHSLATS 570
+ L+++WR D RHF+ P+ M++A+ K P W V+E +A SL S
Sbjct: 210 KSLWINWRGDLHRHFVKPAKTMQQAIKNKPKDFDPSDWQWLVQEHFYSKDFIAMSLRNS 268
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 450 RNEVPWLI*--SPTKVQSFKCKISYYNNKNRIDQGQNYNET 334
RN VPW+I + T ++F IS NNK + Q YN T
Sbjct: 317 RNTVPWVITVAASTIDRAFPTVISLGNNKKFVGQSLYYNAT 357
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 487 KPIPGTEVWKVREVLTRGILLAHSLA 564
KP P + WK+ E+ T G++L LA
Sbjct: 675 KPSPLPDSWKLAEIFTTGVVLGGYLA 700
>04_04_1427 +
33491847-33491888,33493504-33493623,33493740-33493976,
33494754-33495638,33495733-33495837,33495920-33496064,
33496146-33496310,33496391-33496629,33496724-33496756,
33496840-33496921,33497017-33497177,33497282-33497455,
33497549-33497731,33497832-33498019,33498155-33498251
Length = 951
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 487 KPIPGTEVWKVREVLTRGILLAHSLA 564
KP P + WK++E+ GI+L LA
Sbjct: 696 KPSPLPDSWKLKEIFATGIVLGSYLA 721
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 487 KPIPGTEVWKVREVLTRGILLAHSLA 564
KP P + WK+ E+ T G++L LA
Sbjct: 744 KPSPLPDSWKLAEIFTTGVVLGGYLA 769
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,800
Number of Sequences: 37544
Number of extensions: 250840
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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