Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e05
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 32 0.25
10_07_0134 + 13289641-13290216,13290435-13290914 29 1.8
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 28 4.1
02_05_0857 - 32278922-32279102,32280386-32280507,32280987-322811... 28 5.4
01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107 28 5.4
09_06_0354 - 22490833-22491417 27 7.2
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 27 7.2
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 27 9.5
03_05_0145 + 21254448-21255488 27 9.5
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 451 SNPGGGKGEEDSSGQRKGGADGQRQRR 531
S+ GGG G D G+RKG G+R+RR
Sbjct: 308 SSKGGGGGAADRPGRRKGRPKGRRRRR 334
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 433 PAFEKTSNPGGGKG-----EEDSSGQRKGGADGQRQRR 531
P +E + GGG G EED G GG G+++RR
Sbjct: 70 PMYEASGGDGGGGGAASEDEEDGCGGGGGGGGGEKKRR 107
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 454 NPGGGKGEEDSSGQRKGGADGQRQRR 531
N GGG G D G R GG G RR
Sbjct: 114 NDGGGDGGSDGGGGRGGGGGGGGGRR 139
>02_05_0857 -
32278922-32279102,32280386-32280507,32280987-32281101,
32285455-32285858
Length = 273
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +1
Query: 442 EKTSNPGGGKGEEDS--SGQRKG 504
E S+PGGG GE+++ G+RKG
Sbjct: 82 EAESSPGGGSGEDETPEEGRRKG 104
>01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107
Length = 167
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 442 EKTSNPGGGKGEEDSSGQRKGGADGQRQR 528
E+TS GG GEE G R+GG + QR R
Sbjct: 73 ERTS---GGGGEEGVEGGREGGGERQRWR 98
>09_06_0354 - 22490833-22491417
Length = 194
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 124 EVLVATTNLELEPEEVQFTDTSYTSASFESLPPIV 228
++ T LELEP D + T A+ + PP+V
Sbjct: 30 QLTTTTAELELEPTVTVQVDDNKTGAAADETPPVV 64
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 442 EKTSNPGGGKGEEDSSGQRK 501
E SNPG GKGE DS K
Sbjct: 908 EFISNPGAGKGEVDSGAANK 927
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 175 FTDTSYTSASFESLPPI 225
FT SYT++ FE LPP+
Sbjct: 686 FTGYSYTASEFEGLPPL 702
>03_05_0145 + 21254448-21255488
Length = 346
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 442 EKTSNPGGGKGEEDSSGQRKGGADGQRQRR 531
EK GGG+GE++ + GG + R RR
Sbjct: 93 EKAKAKGGGEGEQEVEKKAIGGMEKGRARR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.305 0.125 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,980,196
Number of Sequences: 37544
Number of extensions: 123345
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
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