Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e05
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75543-7|CAA99868.2|  139|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing...    29   2.8  

>Z75543-7|CAA99868.2|  139|Caenorhabditis elegans Hypothetical
           protein K01D12.8 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 460 GGGKGEEDSSGQRKGGADGQRQRR 531
           GGGKG +  SG   GG+ G+R +R
Sbjct: 71  GGGKGGKGGSGGGGGGSGGKRYKR 94


>AC024875-1|AAL00879.1|  474|Caenorhabditis elegans U2af splicing
           factor protein 1,isoform c protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 451 SNPGGGKGEEDSS-GQRKGGADG 516
           S+ GGG GE+D+  G+R+GG  G
Sbjct: 45  SSTGGGGGEDDNDRGERRGGGGG 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.305    0.125    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,397,898
Number of Sequences: 27780
Number of extensions: 96395
Number of successful extensions: 217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)