Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21e04
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    33   0.22 
04_04_0781 - 28034978-28036615                                         30   1.5  
09_04_0642 - 19174274-19174783                                         29   3.5  
01_06_1719 - 39416586-39416600,39418718-39418951,39420192-39420290     28   6.2  
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479...    27   8.2  

>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 214 FIQESSSATSRACF*DQVYRCQPKWGGCGMRQTLLERSRDVDGSLGSLVKA 366
           F + + +  +R  F + ++RC+ KW G GM  TL      VD  L +++KA
Sbjct: 190 FDRATEATLNRFIFPEYLWRCK-KWLGLGMETTLASSVAHVDQYLAAVIKA 239


>04_04_0781 - 28034978-28036615
          Length = 545

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 214 FIQESSSATSRACF*DQVYRCQPKWGGCGMRQTLLERSRDVDGSLGSLVKA 366
           F + + +  +R  F + V+R + KW G GM  TL    + VD  L +++KA
Sbjct: 217 FDRATEATLNRFIFPECVWRFK-KWMGLGMETTLARSVQHVDRYLSAVIKA 266


>09_04_0642 - 19174274-19174783
          Length = 169

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = +2

Query: 188 EIQLHFW*CSSRSRHRPQAVHVFKTRFT------GASQNGVAVECGRHSWSEAATWMAA 346
           E+  H W C SR R    A H F T  T         +N       + +W+E A  MAA
Sbjct: 107 EVSFHLWLCDSRKRLTKAARHGFDTIATLIAWTIWKERNNRVFNQQQKTWAEVARAMAA 165


>01_06_1719 - 39416586-39416600,39418718-39418951,39420192-39420290
          Length = 115

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 288 GWLWNAADTPGAKPRRGWQPGVIGKS 365
           GWLW A  TP  K ++ W  G  G+S
Sbjct: 84  GWLWLA--TPADKSQQAWGAGDFGRS 107


>12_01_0588 +
           4795620-4796093,4796124-4797476,4797575-4797827,
           4797989-4798108,4798542-4798564,4798734-4798841
          Length = 776

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 522 VLLKLASVREVHPAPNPLLQSQHQAYYP 439
           + L++A+V+  HPAP+ L+Q+   A YP
Sbjct: 199 IALRIAAVQADHPAPDKLVQTM-TAQYP 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,919
Number of Sequences: 37544
Number of extensions: 245878
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)