Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21e04
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80847-1|AAB37983.2| 738|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical p... 27 7.3
Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 9.6
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 9.6
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 9.6
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 9.6
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 9.6
>U80847-1|AAB37983.2| 738|Caenorhabditis elegans Hypothetical
protein C17H11.2 protein.
Length = 738
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 237 HKPCMFLRPGLPVPAKMGWL 296
+K C LRPG+PVP M L
Sbjct: 155 YKKCQMLRPGVPVPRPMSLL 174
>Z68106-9|CAE17838.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 477 SEPDEPLEPKPALKVQRKGDVFTIQVNPLK 566
S P P +P P ++ Q K DV+ Q NP +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYR 246
>Z49207-10|CAE17907.1| 551|Caenorhabditis elegans Hypothetical
protein F41E7.9 protein.
Length = 551
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 477 SEPDEPLEPKPALKVQRKGDVFTIQVNPLK 566
S P P +P P ++ Q K DV+ Q NP +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYR 246
>Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical
protein R07E3.5b protein.
Length = 455
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 254 FKTRFTGASQNGVAVECGRHSWSEAATWMAAWGHW 358
+ TR T A N A GR+ WS +W W
Sbjct: 291 YDTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVW 325
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 254 FKTRFTGASQNGVAVECGRHSWSEAATWMAAWGHW 358
+ TR T A N A GR+ WS +W W
Sbjct: 348 YDTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVW 382
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 361 LPMTPGCHPRRGF--APGVSAAFHSHPILAG-TGKPGLKNMHGL 239
LP TPG +RGF APG+ P L+G G PG K GL
Sbjct: 843 LPGTPGLEGQRGFPGAPGLKGG-DGLPGLSGQPGYPGEKGDAGL 885
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 361 LPMTPGCHPRRGF--APGVSAAFHSHPILAG-TGKPGLKNMHGL 239
LP TPG +RGF APG+ P L+G G PG K GL
Sbjct: 842 LPGTPGLEGQRGFPGAPGLKGG-DGLPGLSGQPGYPGEKGDAGL 884
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 361 LPMTPGCHPRRGF--APGVSAAFHSHPILAG-TGKPGLKNMHGL 239
LP TPG +RGF APG+ P L+G G PG K GL
Sbjct: 842 LPGTPGLEGQRGFPGAPGLKGG-DGLPGLSGQPGYPGEKGDAGL 884
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 361 LPMTPGCHPRRGF--APGVSAAFHSHPILAG-TGKPGLKNMHGL 239
LP TPG +RGF APG+ P L+G G PG K GL
Sbjct: 843 LPGTPGLEGQRGFPGAPGLKGG-DGLPGLSGQPGYPGEKGDAGL 885
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 361 LPMTPGCHPRRGF--APGVSAAFHSHPILAG-TGKPGLKNMHGL 239
LP TPG +RGF APG+ P L+G G PG K GL
Sbjct: 879 LPGTPGLEGQRGFPGAPGLKGG-DGLPGLSGQPGYPGEKGDAGL 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,374
Number of Sequences: 27780
Number of extensions: 200025
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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