Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d22
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.8  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   4.2  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 279 QNGRFDVTEKSLKDFVTQKIKRN 347
           QNG F+++ K  +D    K++RN
Sbjct: 674 QNGAFEISRKMFEDLADLKVRRN 696


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 266 RVYNRTDENTITSLVISDILIRVGNIKNHYFNTYT 162
           RV NRT    IT+++I       G +++ YF TYT
Sbjct: 365 RVMNRT---FITAVIIDFFYYLAGYLQSMYFTTYT 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,013
Number of Sequences: 5004
Number of extensions: 43020
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)