Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d22
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720...    29   3.2  
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397     27   7.5  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    27   9.9  

>09_02_0589 +
           10969195-10969325,10971135-10971607,10971894-10972032,
           10972645-10972722,10972886-10973055,10973199-10973467,
           10973655-10973781,10973964-10974035,10975084-10975273,
           10975480-10975879
          Length = 682

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 526 SLFF*YNVDDVKGEFQVISYSYPGREKGQNIRTQYLIIRLSTIVVNRLLTIVTFRTERNS 347
           S  F +N D       +I  S PG+   +      LI+  +T++V  +L  + +R +RNS
Sbjct: 270 SFIFSFNSDGNMCNKPIIVPSPPGKRSNRAATLAILIVVPATVIVVLVLVFLIWRQKRNS 329


>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
          Length = 851

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +3

Query: 327 TQKIKRNEFLSVLNVTIVNNLL 392
           T+ +K+N +L V+N+TIV +LL
Sbjct: 767 TELLKKNRWLRVMNITIVLDLL 788


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 397 QWLINELLNIECVYSVLFHGLGNYMK 474
           +WL+ E+L+ +C  +   H L  Y+K
Sbjct: 2   EWLVQEVLDFQCFVTTTHHFLWFYLK 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,315,923
Number of Sequences: 37544
Number of extensions: 198852
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)