Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21d21
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.4  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   4.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   4.5  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    24   7.9  

>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 189 FIFTLNLSGRELTSIRSTLIKINSRS*MY 103
           FI T++ S  E TS RSTL++  SRS  Y
Sbjct: 39  FILTIDRSIVENTSGRSTLLRSVSRSIKY 67


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 348 SSVVVRKEKLAQVQNIEMYKQRRAVSGSLFE 256
           SSV+  KE +A V +IE  +QR   +G + +
Sbjct: 24  SSVLALKEAIAPVADIEKERQRLIYAGRVLK 54


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 8   KFELGSVARICELYKN 55
           KF++  V R+C+LY N
Sbjct: 434 KFDIAEVERMCKLYSN 449


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 225 SRSVIRSF*KKYFIFTLNLSGRELTSIRSTLIKINSR 115
           SR+ +    +   IF +  + +E TS+ STL+KI +R
Sbjct: 34  SRTAVSPLERMKIIFQVQ-NNKEYTSLTSTLVKIWNR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,040
Number of Sequences: 5004
Number of extensions: 21203
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)